Comparison of Bioinformatics Pipelines and Operating Systems for the Analyses of 16S rRNA Gene Amplicon Sequences in Human Fecal Samples

Amplicon high-throughput sequencing of 16S ribosomal RNA (rRNA) gene is currently the most widely used technique to investigate complex gut microbial communities. Microbial identification might be influenced by several factors, including the choice of bioinformatic pipelines, making comparisons acro...

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Veröffentlicht in:Front Microbiol
Hauptverfasser: Marizzoni, Moira, Gurry, Thomas, Provasi, Stefania, Greub, Gilbert, Lopizzo, Nicola, Ribaldi, Federica, Festari, Cristina, Mazzelli, Monica, Mombelli, Elisa, Salvatore, Marco, Mirabelli, Peppino, Franzese, Monica, Soricelli, Andrea, Frisoni, Giovanni B., Cattaneo, Annamaria
Format: Artigo
Sprache:Inglês
Veröffentlicht: Frontiers Media S.A. 2020
Schlagworte:
Microbiology
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC7318847/
https://ncbi.nlm.nih.gov/pubmed/32636817
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fmicb.2020.01262
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