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Efficient Construction of a Complete Index for Pan-Genomics Read Alignment

Short-read aligners predominantly use the FM-index, which is easily able to index one or a few human genomes. However, it does not scale well to indexing collections of thousands of genomes. Driving this issue are the two chief components of the index: (1) a rank data structure over the Burrows–Whee...

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Библиографические подробности
Опубликовано в: :J Comput Biol
Главные авторы: Kuhnle, Alan, Mun, Taher, Boucher, Christina, Gagie, Travis, Langmead, Ben, Manzini, Giovanni
Формат: Artigo
Язык:Inglês
Опубликовано: Mary Ann Liebert, Inc., publishers 2020
Предметы:
Online-ссылка:https://ncbi.nlm.nih.gov/pmc/articles/PMC7185338/
https://ncbi.nlm.nih.gov/pubmed/32181684
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1089/cmb.2019.0309
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