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BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs
BACKGROUND: The identification of all matches of a large set of position weight matrices (PWMs) in long DNA sequences requires significant computational resources for which a number of efficient yet complex algorithms have been proposed. RESULTS: We propose BLAMM, a simple and efficient tool inspire...
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| Опубликовано в: : | BMC Bioinformatics |
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| Главный автор: | |
| Формат: | Artigo |
| Язык: | Inglês |
| Опубликовано: |
BioMed Central
2020
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| Предметы: | |
| Online-ссылка: | https://ncbi.nlm.nih.gov/pmc/articles/PMC7068855/ https://ncbi.nlm.nih.gov/pubmed/32164557 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-020-3348-6 |
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