Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network

Nanopore sequencing is promising because of its long read length and high speed. During sequencing, a strand of DNA/RNA passes through a biological nanopore, which causes the current in the pore to fluctuate. During basecalling, context-dependent current measurements are translated into the base seq...

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Bibliographic Details
Published in:Front Genet
Main Authors: Zeng, Jingwen, Cai, Hongmin, Peng, Hong, Wang, Haiyan, Zhang, Yue, Akutsu, Tatsuya
Format: Artigo
Language:Inglês
Published: Frontiers Media S.A. 2020
Subjects:
Genetics
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC6984161/
https://ncbi.nlm.nih.gov/pubmed/32038706
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fgene.2019.01332
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