Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases

BACKGROUND: Whole genome sequencing (WGS) is a reliable tool for studying tuberculosis (TB) transmission. WGS data are usually processed by custom-built analysis pipelines with little standardisation between them. AIM: To compare the impact of variability of several WGS analysis pipelines used inter...

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Detalhes bibliográficos
Publicado no:Euro Surveill
Main Authors: Jajou, Rana, Kohl, Thomas A, Walker, Timothy, Norman, Anders, Cirillo, Daniela Maria, Tagliani, Elisa, Niemann, Stefan, de Neeling, Albert, Lillebaek, Troels, Anthony, Richard M, van Soolingen, Dick
Formato: Artigo
Idioma:Inglês
Publicado em: European Centre for Disease Prevention and Control (ECDC) 2019
Assuntos:
Research
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6918587/
https://ncbi.nlm.nih.gov/pubmed/31847944
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.2807/1560-7917.ES.2019.24.50.1900130
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