A Simple and Robust Statistical Method to Define Genetic Relatedness of Samples Related to Outbreaks at the Genomic Scale – Application to Retrospective Salmonella Foodborne Outbreak Investigations

The investigation of foodborne outbreaks (FBOs) from genomic data typically relies on inspecting the relatedness of samples through a phylogenomic tree computed on either SNPs, genes, kmers, or alleles (i.e., cgMLST and wgMLST). The phylogenomic reconstruction is often time-consuming, computation-in...

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Bibliographische Detailangaben
Veröffentlicht in:Front Microbiol
Hauptverfasser: Radomski, Nicolas, Cadel-Six, Sabrina, Cherchame, Emeline, Felten, Arnaud, Barbet, Pauline, Palma, Federica, Mallet, Ludovic, Le Hello, Simon, Weill, François-Xavier, Guillier, Laurent, Mistou, Michel-Yves
Format: Artigo
Sprache:Inglês
Veröffentlicht: Frontiers Media S.A. 2019
Schlagworte:
Microbiology
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6821717/
https://ncbi.nlm.nih.gov/pubmed/31708892
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fmicb.2019.02413
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