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PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes

SUMMARY: Cellular lineage trees can be derived from single-cell RNA sequencing snapshots of differentiating cells. Currently, only datasets with simple topologies are available. To test and further develop tools for lineage tree reconstruction, we need test datasets with known complex topologies. PR...

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Détails bibliographiques
Publié dans:Bioinformatics
Auteurs principaux: Papadopoulos, Nikolaos, Gonzalo, Parra R, Söding, Johannes
Format: Artigo
Langue:Inglês
Publié: Oxford University Press 2019
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC6748774/
https://ncbi.nlm.nih.gov/pubmed/30715210
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btz078
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