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Replica exchange Gaussian accelerated molecular dynamics: Improved enhanced sampling and free energy calculation

Through adding a harmonic boost potential to smooth the system potential energy surface, Gaussian accelerated molecular dynamics (GaMD) provides enhanced sampling and free energy calculation of biomolecules without the need of predefined reaction coordinates. This work continues to improve the accel...

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Bibliographic Details
Published in:J Chem Theory Comput
Main Authors: Huang, Yu-ming M., McCammon, J. Andrew, Miao, Yinglong
Format: Artigo
Language:Inglês
Published: 2018
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC6747702/
https://ncbi.nlm.nih.gov/pubmed/29489349
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/acs.jctc.7b01226
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