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Replica exchange Gaussian accelerated molecular dynamics: Improved enhanced sampling and free energy calculation

Through adding a harmonic boost potential to smooth the system potential energy surface, Gaussian accelerated molecular dynamics (GaMD) provides enhanced sampling and free energy calculation of biomolecules without the need of predefined reaction coordinates. This work continues to improve the accel...

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Shranjeno v:
Bibliografske podrobnosti
izdano v:J Chem Theory Comput
Main Authors: Huang, Yu-ming M., McCammon, J. Andrew, Miao, Yinglong
Format: Artigo
Jezik:Inglês
Izdano: 2018
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC6747702/
https://ncbi.nlm.nih.gov/pubmed/29489349
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/acs.jctc.7b01226
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