gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Unknown sequences, or gaps, are present in many published genomes across public databases. Gap filling is an important finishing step in de novo genome assembly, especially in large genomes. The gap filling problem is nontrivial and while there are many computational tools partially solving the prob...

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Publicado en:PLoS One
Autores principales: Kammonen, Juhana I., Smolander, Olli-Pekka, Paulin, Lars, Pereira, Pedro A. B., Laine, Pia, Koskinen, Patrik, Jernvall, Jukka, Auvinen, Petri
Formato: Artigo
Lenguaje:Inglês
Publicado: Public Library of Science 2019
Materias:
Research Article
Acceso en línea:https://ncbi.nlm.nih.gov/pmc/articles/PMC6733440/
https://ncbi.nlm.nih.gov/pubmed/31498807
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0216885
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