gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Unknown sequences, or gaps, are present in many published genomes across public databases. Gap filling is an important finishing step in de novo genome assembly, especially in large genomes. The gap filling problem is nontrivial and while there are many computational tools partially solving the prob...

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Dettagli Bibliografici
Pubblicato in:PLoS One
Autori principali: Kammonen, Juhana I., Smolander, Olli-Pekka, Paulin, Lars, Pereira, Pedro A. B., Laine, Pia, Koskinen, Patrik, Jernvall, Jukka, Auvinen, Petri
Natura: Artigo
Lingua:Inglês
Pubblicazione: Public Library of Science 2019
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Research Article
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC6733440/
https://ncbi.nlm.nih.gov/pubmed/31498807
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0216885
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