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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Unknown sequences, or gaps, are present in many published genomes across public databases. Gap filling is an important finishing step in de novo genome assembly, especially in large genomes. The gap filling problem is nontrivial and while there are many computational tools partially solving the prob...

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Detalhes bibliográficos
Publicado no:PLoS One
Main Authors: Kammonen, Juhana I., Smolander, Olli-Pekka, Paulin, Lars, Pereira, Pedro A. B., Laine, Pia, Koskinen, Patrik, Jernvall, Jukka, Auvinen, Petri
Formato: Artigo
Idioma:Inglês
Publicado em: Public Library of Science 2019
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6733440/
https://ncbi.nlm.nih.gov/pubmed/31498807
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0216885
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