Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP

Bacteria are highly diverse, even within a species; thus, there have been many studies which classify a single species into multiple types and analyze the genetic differences between them. Recently, the use of whole-genome sequencing (WGS) has been popular for these analyses, and the identification...

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Vydáno v:Microb Genom
Hlavní autoři: Yoshimura, Dai, Kajitani, Rei, Gotoh, Yasuhiro, Katahira, Katsuyuki, Okuno, Miki, Ogura, Yoshitoshi, Hayashi, Tetsuya, Itoh, Takehiko
Médium: Artigo
Jazyk:Inglês
Vydáno: Microbiology Society 2019
Témata:
Methods
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC6562250/
https://ncbi.nlm.nih.gov/pubmed/31099741
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000261
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