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An average-case sublinear forward algorithm for the haploid Li and Stephens model

BACKGROUND: Hidden Markov models of haplotype inheritance such as the Li and Stephens model allow for computationally tractable probability calculations using the forward algorithm as long as the representative reference panel used in the model is sufficiently small. Specifically, the monoploid Li a...

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Detalhes bibliográficos
Publicado no:Algorithms Mol Biol
Main Authors: Rosen, Yohei M., Paten, Benedict J.
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2019
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6446408/
https://ncbi.nlm.nih.gov/pubmed/30988694
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13015-019-0144-9
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