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External memory BWT and LCP computation for sequence collections with applications

BACKGROUND: Sequencing technologies produce larger and larger collections of biosequences that have to be stored in compressed indices supporting fast search operations. Many compressed indices are based on the Burrows–Wheeler Transform (BWT) and the longest common prefix (LCP) array. Because of the...

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Détails bibliographiques
Publié dans:Algorithms Mol Biol
Auteurs principaux: Egidi, Lavinia, Louza, Felipe A., Manzini, Giovanni, Telles, Guilherme P.
Format: Artigo
Langue:Inglês
Publié: BioMed Central 2019
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC6408864/
https://ncbi.nlm.nih.gov/pubmed/30899322
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13015-019-0140-0
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