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gsufsort: constructing suffix arrays, LCP arrays and BWTs for string collections

BACKGROUND: The construction of a suffix array for a collection of strings is a fundamental task in Bioinformatics and in many other applications that process strings. Related data structures, as the Longest Common Prefix array, the Burrows–Wheeler transform, and the document array, are often needed...

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Publicat a:Algorithms Mol Biol
Autors principals: Louza, Felipe A., Telles, Guilherme P., Gog, Simon, Prezza, Nicola, Rosone, Giovanna
Format: Artigo
Idioma:Inglês
Publicat: BioMed Central 2020
Matèries:
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC7507297/
https://ncbi.nlm.nih.gov/pubmed/32973918
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13015-020-00177-y
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