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A de novo shape-motif discovery algorithm reveals preferences of transcription factors for DNA shape beyond sequence-motifs

DNA shape adds specificity to sequence-motifs but has not been explored systematically outside this context. We hypothesized that DNA binding proteins (DBPs) preferentially occupy DNA with specific structures (“shape-motifs”) regardless of whether or not these correspond to high information content...

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Shranjeno v:
Bibliografske podrobnosti
izdano v:Cell Syst
Main Authors: Samee, Md. Abul Hassan, Bruneau, Benoit G., Pollard, Katherine S.
Format: Artigo
Jezik:Inglês
Izdano: 2019
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC6368855/
https://ncbi.nlm.nih.gov/pubmed/30660610
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.cels.2018.12.001
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