Fast and flexible bacterial genomic epidemiology with PopPUNK

The routine use of genomics for disease surveillance provides the opportunity for high-resolution bacterial epidemiology. Current whole-genome clustering and multilocus typing approaches do not fully exploit core and accessory genomic variation, and they cannot both automatically identify, and subse...

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Bibliografiske detaljer
Udgivet i:Genome Res
Main Authors: Lees, John A., Harris, Simon R., Tonkin-Hill, Gerry, Gladstone, Rebecca A., Lo, Stephanie W., Weiser, Jeffrey N., Corander, Jukka, Bentley, Stephen D., Croucher, Nicholas J.
Format: Artigo
Sprog:Inglês
Udgivet: Cold Spring Harbor Laboratory Press 2019
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Method
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6360808/
https://ncbi.nlm.nih.gov/pubmed/30679308
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.241455.118
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