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Reduced Free Energy Perturbation/Hamiltonian Replica Exchange Molecular Dynamics Method with Unbiased Alchemical Thermodynamic Axis

Replica-exchange molecular dynamics (REMD) has been proven to efficiently improve the convergence of free energy perturbation (FEP) calculations involving considerable reorganization of their surrounding. We previously introduced the FEP/(λ,H)-REMD algorithm for ligand binding, in which replicas alo...

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Bibliografiske detaljer
Udgivet i:J Phys Chem B
Main Authors: Jiang, Wei, Thirman, Jonathan, Jo, Sunhwan, Roux, Benoît
Format: Artigo
Sprog:Inglês
Udgivet: 2018
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6339808/
https://ncbi.nlm.nih.gov/pubmed/30253098
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/acs.jpcb.8b03277
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