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YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU

MOTIVATION: Motif discovery in large biopolymer sequence datasets can be computationally demanding, presenting significant challenges for discovery in omics research. MEME, arguably one of the most popular motif discovery software, takes quadratic time with respect to dataset size, leading to excess...

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Bibliografiske detaljer
Udgivet i:Bioinformatics
Main Authors: Quang, Daniel, Guan, Yuanfang, Parker, Stephen C J
Format: Artigo
Sprog:Inglês
Udgivet: Oxford University Press 2018
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6184538/
https://ncbi.nlm.nih.gov/pubmed/29790915
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/bty396
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