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RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly

MOTIVATION: The haploid mammalian Y chromosome is usually under-represented in genome assemblies due to high repeat content and low depth due to its haploid nature. One strategy to ameliorate the low coverage of Y sequences is to experimentally enrich Y-specific material before assembly. As the enri...

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Bibliografiske detaljer
Udgivet i:Bioinformatics
Main Authors: Rangavittal, Samarth, Harris, Robert S, Cechova, Monika, Tomaszkiewicz, Marta, Chikhi, Rayan, Makova, Kateryna D, Medvedev, Paul
Format: Artigo
Sprog:Inglês
Udgivet: Oxford University Press 2018
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6030959/
https://ncbi.nlm.nih.gov/pubmed/29194476
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btx771
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