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HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies

Culture-independent analysis of microbial communities frequently relies on amplification and sequencing of the prokaryotic 16S ribosomal RNA gene. Typical analysis pipelines group sequences into operational taxonomic units (OTUs) to infer taxonomic and phylogenetic relationships. Here, we present Hm...

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Shranjeno v:
Bibliografske podrobnosti
izdano v:Genome Biol
Main Authors: Zheng, Qi, Bartow-McKenney, Casey, Meisel, Jacquelyn S., Grice, Elizabeth A.
Format: Artigo
Jezik:Inglês
Izdano: BioMed Central 2018
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC6020470/
https://ncbi.nlm.nih.gov/pubmed/29950165
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13059-018-1450-0
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