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Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver

CTCF and cohesin are key drivers of 3D-nuclear organization, anchoring the megabase-scale Topologically Associating Domains (TADs) that segment the genome. Here, we present and validate a computational method to predict cohesin-and-CTCF binding sites that form intra-TAD DNA loops. The intra-TAD loop...

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Detalhes bibliográficos
Publicado no:eLife
Main Authors: Matthews, Bryan J, Waxman, David J
Formato: Artigo
Idioma:Inglês
Publicado em: eLife Sciences Publications, Ltd 2018
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC5986275/
https://ncbi.nlm.nih.gov/pubmed/29757144
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.7554/eLife.34077
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