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Species classifier choice is a key consideration when analysing low-complexity food microbiome data

BACKGROUND: The use of shotgun metagenomics to analyse low-complexity microbial communities in foods has the potential to be of considerable fundamental and applied value. However, there is currently no consensus with respect to choice of species classification tool, platform, or sequencing depth. H...

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Опубликовано в: :Microbiome
Главные авторы: Walsh, Aaron M., Crispie, Fiona, O’Sullivan, Orla, Finnegan, Laura, Claesson, Marcus J., Cotter, Paul D.
Формат: Artigo
Язык:Inglês
Опубликовано: BioMed Central 2018
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Online-ссылка:https://ncbi.nlm.nih.gov/pmc/articles/PMC5859664/
https://ncbi.nlm.nih.gov/pubmed/29554948
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s40168-018-0437-0
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