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On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data

To benchmark algorithms for automated plasmid sequence reconstruction from short-read sequencing data, we selected 42 publicly available complete bacterial genome sequences spanning 12 genera, containing 148 plasmids. We predicted plasmids from short-read data with four programs (PlasmidSPAdes, Recy...

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Xehetasun bibliografikoak
Argitaratua izan da:Microb Genom
Egile Nagusiak: Arredondo-Alonso, Sergio, Willems, Rob J., van Schaik, Willem, Schürch, Anita C.
Formatua: Artigo
Hizkuntza:Inglês
Argitaratua: Microbiology Society 2017
Gaiak:
Sarrera elektronikoa:https://ncbi.nlm.nih.gov/pmc/articles/PMC5695206/
https://ncbi.nlm.nih.gov/pubmed/29177087
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000128
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