Direct comparison of amino acid and salt interactions with double-stranded and single-stranded DNA from explicit-solvent molecular dynamics simulations

Eitemau Tebyg

• COFFDROP: A Coarse-Grained Nonbonded Force Field for Proteins Derived from All-Atom Explicit-Solvent Molecular Dynamics Simulations of Amino Acids
  gan: Andrews, Casey T., et al.
  Cyhoeddwyd: (2014)
• Large-scale analysis of 48 DNA and 48 RNA tetranucleotides studied by 1 μs explicit-solvent molecular dynamics simulations
  gan: Schrodt, Michael V., et al.
  Cyhoeddwyd: (2015)
• Molecular Dynamics Simulations of Double-Stranded DNA in an Explicit Solvent Model with the Zero-Dipole Summation Method
  gan: Arakawa, Takamasa, et al.
  Cyhoeddwyd: (2013)
• Molecular dynamics simulations of highly crowded amino acid solutions: comparisons of eight different force field combinations with experiment and with each other
  gan: Andrews, Casey T., et al.
  Cyhoeddwyd: (2013)
• Parameterization of backbone flexibility in a coarse-grained force field for proteins (COFFDROP) derived from all-atom explicit-solvent molecular dynamics simulations of all possible two-residue peptides
  gan: Frembgen-Kesner, Tamara, et al.
  Cyhoeddwyd: (2015)