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EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments

BACKGROUND: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold recognition. We propose a new automated method, EvDTree, based on a decision tree algorithm, for automatic derivation of...

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Pubblicato in:BMC Bioinformatics
Autori principali: Gelly, Jean-Christophe, Chiche, Laurent, Gracy, Jérôme
Natura: Artigo
Lingua:Inglês
Pubblicazione: BMC 2005
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Accesso online:https://ncbi.nlm.nih.govhttps://pmc.ncbi.nlm.nih.gov/articles/PMC545998/
https://ncbi.nlm.nih.govhttps://pubmed.ncbi.nlm.nih.gov/15638949/
https://ncbi.nlm.nih.govhttps://doi.org/10.1186/1471-2105-6-4
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