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Accelerated flexible protein-ligand docking using Hamiltonian replica exchange with a repulsive biasing potential

A molecular dynamics replica exchange based method has been developed that allows rapid identification of putative ligand binding sites on the surface of biomolecules. The approach employs a set of ambiguity restraints in replica simulations between receptor and ligand that allow close contacts in t...

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Detalhes bibliográficos
Publicado no:PLoS One
Main Authors: Ostermeir, Katja, Zacharias, Martin
Formato: Artigo
Idioma:Inglês
Publicado em: Public Library of Science 2017
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC5313199/
https://ncbi.nlm.nih.gov/pubmed/28207811
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0172072
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