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Accelerating metagenomic read classification on CUDA-enabled GPUs

BACKGROUND: Metagenomic sequencing studies are becoming increasingly popular with prominent examples including the sequencing of human microbiomes and diverse environments. A fundamental computational problem in this context is read classification; i.e. the assignment of each read to a taxonomic lab...

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Vydáno v:BMC Bioinformatics
Hlavní autoři: Kobus, Robin, Hundt, Christian, Müller, André, Schmidt, Bertil
Médium: Artigo
Jazyk:Inglês
Vydáno: BioMed Central 2017
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On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC5209836/
https://ncbi.nlm.nih.gov/pubmed/28049411
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-016-1434-6
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