Wird geladen...

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

We present the Metagenomic Intra-species Diversity Analysis System (MIDAS), which is an integrated computational pipeline for quantifying bacterial species abundance and strain-level genomic variation, including gene content and single-nucleotide polymorphisms (SNPs), from shotgun metagenomes. Our m...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Genome Res
Hauptverfasser: Nayfach, Stephen, Rodriguez-Mueller, Beltran, Garud, Nandita, Pollard, Katherine S.
Format: Artigo
Sprache:Inglês
Veröffentlicht: Cold Spring Harbor Laboratory Press 2016
Schlagworte:
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC5088602/
https://ncbi.nlm.nih.gov/pubmed/27803195
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.201863.115
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!