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An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
We present the Metagenomic Intra-species Diversity Analysis System (MIDAS), which is an integrated computational pipeline for quantifying bacterial species abundance and strain-level genomic variation, including gene content and single-nucleotide polymorphisms (SNPs), from shotgun metagenomes. Our m...
Gespeichert in:
| Veröffentlicht in: | Genome Res |
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| Hauptverfasser: | , , , |
| Format: | Artigo |
| Sprache: | Inglês |
| Veröffentlicht: |
Cold Spring Harbor Laboratory Press
2016
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| Schlagworte: | |
| Online Zugang: | https://ncbi.nlm.nih.gov/pmc/articles/PMC5088602/ https://ncbi.nlm.nih.gov/pubmed/27803195 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.201863.115 |
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