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An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

We present the Metagenomic Intra-species Diversity Analysis System (MIDAS), which is an integrated computational pipeline for quantifying bacterial species abundance and strain-level genomic variation, including gene content and single-nucleotide polymorphisms (SNPs), from shotgun metagenomes. Our m...

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Bibliografiska uppgifter
I publikationen:Genome Res
Huvudupphovsmän: Nayfach, Stephen, Rodriguez-Mueller, Beltran, Garud, Nandita, Pollard, Katherine S.
Materialtyp: Artigo
Språk:Inglês
Publicerad: Cold Spring Harbor Laboratory Press 2016
Ämnen:
Länkar:https://ncbi.nlm.nih.gov/pmc/articles/PMC5088602/
https://ncbi.nlm.nih.gov/pubmed/27803195
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.201863.115
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