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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie, and Ballgown

High-throughput sequencing of messenger RNA (RNA-seq) has become the standard method for measuring and comparing the levels of gene expression in a wide variety of species and conditions. RNA-seq experiments generate very large, complex data sets that demand fast, accurate, and flexible software to...

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Publicat a:Nat Protoc
Autors principals: Pertea, Mihaela, Kim, Daehwan, Pertea, Geo, Leek, Jeffrey T., Salzberg, Steven L.
Format: Artigo
Idioma:Inglês
Publicat: 2016
Matèries:
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC5032908/
https://ncbi.nlm.nih.gov/pubmed/27560171
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1038/nprot.2016.095
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