BASE: a practical de novo assembler for large genomes using long NGS reads

BACKGROUND: De novo genome assembly using NGS data remains a computation-intensive task especially for large genomes. In practice, efficiency is often a primary concern and favors using a more efficient assembler like SOAPdenovo2. Yet SOAPdenovo2, based on de Bruijn graph, fails to take full advanta...

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Bibliografske podrobnosti
izdano v:BMC Genomics
Main Authors: Liu, Binghang, Liu, Chi-Man, Li, Dinghua, Li, Yingrui, Ting, Hing-Fung, Yiu, Siu-Ming, Luo, Ruibang, Lam, Tak-Wah
Format: Artigo
Jezik:Inglês
Izdano: BioMed Central 2016
Teme:
Research
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC5009518/
https://ncbi.nlm.nih.gov/pubmed/27586129
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12864-016-2829-5
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