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TransRate: reference-free quality assessment of de novo transcriptome assemblies

TransRate is a tool for reference-free quality assessment of de novo transcriptome assemblies. Using only the sequenced reads and the assembly as input, we show that multiple common artifacts of de novo transcriptome assembly can be readily detected. These include chimeras, structural errors, incomp...

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Vydáno v:Genome Res
Hlavní autoři: Smith-Unna, Richard, Boursnell, Chris, Patro, Rob, Hibberd, Julian M., Kelly, Steven
Médium: Artigo
Jazyk:Inglês
Vydáno: Cold Spring Harbor Laboratory Press 2016
Témata:
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC4971766/
https://ncbi.nlm.nih.gov/pubmed/27252236
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.196469.115
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