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gkmSVM: an R package for gapped-kmer SVM

Summary: We present a new R package for training gapped-kmer SVM classifiers for DNA and protein sequences. We describe an improved algorithm for kernel matrix calculation that speeds run time by about 2 to 5-fold over our original gkmSVM algorithm. This package supports several sequence kernels, in...

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Détails bibliographiques
Publié dans:Bioinformatics
Auteurs principaux: Ghandi, Mahmoud, Mohammad-Noori, Morteza, Ghareghani, Narges, Lee, Dongwon, Garraway, Levi, Beer, Michael A.
Format: Artigo
Langue:Inglês
Publié: Oxford University Press 2016
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC4937197/
https://ncbi.nlm.nih.gov/pubmed/27153639
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw203
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