ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly

Comprehensive identification of insertions/deletions (indels) across the full size spectrum from second generation sequencing is challenging due to the relatively short read length inherent in the technology. Different indel calling methods exist but are limited in detection to specific sizes with v...

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Bibliographic Details
Published in:Genome Med
Main Authors: Yang, Rendong, Nelson, Andrew C., Henzler, Christine, Thyagarajan, Bharat, Silverstein, Kevin A. T.
Format: Artigo
Language:Inglês
Published: BioMed Central 2015
Subjects:
Method
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC4671222/
https://ncbi.nlm.nih.gov/pubmed/26643039
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13073-015-0251-2
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