Spaced Seed Data Structures for De Novo Assembly

De novo assembly of the genome of a species is essential in the absence of a reference genome sequence. Many scalable assembly algorithms use the de Bruijn graph (DBG) paradigm to reconstruct genomes, where a table of subsequences of a certain length is derived from the reads, and their overlaps are...

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Vydáno v:Int J Genomics
Hlavní autoři: Birol, Inanç, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D., Raghavan, Karthika, Vandervalk, Benjamin P., Raymond, Anthony, Warren, René L.
Médium: Artigo
Jazyk:Inglês
Vydáno: Hindawi Publishing Corporation 2015
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Research Article
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC4619942/
https://ncbi.nlm.nih.gov/pubmed/26539459
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1155/2015/196591
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