The khmer software package: enabling efficient nucleotide sequence analysis

The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normaliza...

Πλήρης περιγραφή

Αποθηκεύτηκε σε:
Λεπτομέρειες βιβλιογραφικής εγγραφής
Τόπος έκδοσης:F1000Res
Κύριοι συγγραφείς: Crusoe, Michael R., Alameldin, Hussien F., Awad, Sherine, Boucher, Elmar, Caldwell, Adam, Cartwright, Reed, Charbonneau, Amanda, Constantinides, Bede, Edvenson, Greg, Fay, Scott, Fenton, Jacob, Fenzl, Thomas, Fish, Jordan, Garcia-Gutierrez, Leonor, Garland, Phillip, Gluck, Jonathan, González, Iván, Guermond, Sarah, Guo, Jiarong, Gupta, Aditi, Herr, Joshua R., Howe, Adina, Hyer, Alex, Härpfer, Andreas, Irber, Luiz, Kidd, Rhys, Lin, David, Lippi, Justin, Mansour, Tamer, McA'Nulty, Pamela, McDonald, Eric, Mizzi, Jessica, Murray, Kevin D., Nahum, Joshua R., Nanlohy, Kaben, Nederbragt, Alexander Johan, Ortiz-Zuazaga, Humberto, Ory, Jeramia, Pell, Jason, Pepe-Ranney, Charles, Russ, Zachary N., Schwarz, Erich, Scott, Camille, Seaman, Josiah, Sievert, Scott, Simpson, Jared, Skennerton, Connor T., Spencer, James, Srinivasan, Ramakrishnan, Standage, Daniel, Stapleton, James A., Steinman, Susan R., Stein, Joe, Taylor, Benjamin, Trimble, Will, Wiencko, Heather L., Wright, Michael, Wyss, Brian, Zhang, Qingpeng, zyme, en, Brown, C. Titus
Μορφή: Artigo
Γλώσσα:Inglês
Έκδοση: F1000Research 2015
Θέματα:
Software Tool Article
Διαθέσιμο Online:https://ncbi.nlm.nih.gov/pmc/articles/PMC4608353/
https://ncbi.nlm.nih.gov/pubmed/26535114
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.12688/f1000research.6924.1
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