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Large Scale Asynchronous and Distributed Multi-Dimensional Replica Exchange Molecular Simulations and Efficiency Analysis

We describe methods to perform replica exchange molecular dynamics (REMD) simulations asynchronously (ASyncRE). The methods are designed to facilitate large scale REMD simulations on grid computing networks consisting of heterogeneous and distributed computing environments as well as on homogeneous...

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Bibliografske podrobnosti
izdano v:J Comput Chem
Main Authors: Xia, Junchao, Flynn, William F., Gallicchio, Emilio, Zhang, Bin W., He, Peng, Tan, Zhiqiang, Levy, Ronald M.
Format: Artigo
Jezik:Inglês
Izdano: 2015
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC4512903/
https://ncbi.nlm.nih.gov/pubmed/26149645
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/jcc.23996
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