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Physics-based potentials for coarse-grained modeling of protein-DNA interactions

Physics-based potentials have been developed for the interactions between proteins and DNA for simulations with the UNRES+NARES-2P force field. The mean-field interactions between a protein and a DNA molecule can be divided into eight categories: (1) nonpolar side chain-DNA base, (2) polar uncharged...

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Bibliografiska uppgifter
I publikationen:J Chem Theory Comput
Huvudupphovsmän: Yin, Yanping, Sieradzan, Adam K., Liwo, Adam, He, Yi, Scheraga, Harold A.
Materialtyp: Artigo
Språk:Inglês
Publicerad: 2015
Ämnen:
Länkar:https://ncbi.nlm.nih.gov/pmc/articles/PMC4455907/
https://ncbi.nlm.nih.gov/pubmed/26052263
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ct5009558
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