DIA-Umpire: comprehensive computational framework for data independent acquisition proteomics

Due to recent improvements in mass spectrometry (MS), there is an increased interest in data independent acquisition (DIA) strategies in which all peptides are systematically fragmented using wide mass isolation windows (“multiplex fragmentation”). DIA-Umpire (http://diaumpire.sourceforge.net/), a c...

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Bibliografiske detaljer
Udgivet i:Nat Methods
Main Authors: Tsou, Chih-Chiang, Avtonomov, Dmitry, Larsen, Brett, Tucholska, Monika, Choi, Hyungwon, Gingras, Anne-Claude, Nesvizhskii, Alexey I.
Format: Artigo
Sprog:Inglês
Udgivet: 2015
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Article
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC4399776/
https://ncbi.nlm.nih.gov/pubmed/25599550
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1038/nmeth.3255
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