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Faster algorithms for RNA-folding using the Four-Russians method

BACKGROUND: The secondary structure that maximizes the number of non-crossing matchings between complimentary bases of an RNA sequence of length n can be computed in O(n(3)) time using Nussinov’s dynamic programming algorithm. The Four-Russians method is a technique that reduces the running time for...

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Detalhes bibliográficos
Main Authors: Venkatachalam, Balaji, Gusfield, Dan, Frid, Yelena
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2014
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3996002/
https://ncbi.nlm.nih.gov/pubmed/24602450
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1748-7188-9-5
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