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SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications

BACKGROUND: The Smith-Waterman algorithm, which produces the optimal pairwise alignment between two sequences, is frequently used as a key component of fast heuristic read mapping and variation detection tools for next-generation sequencing data. Though various fast Smith-Waterman implementations ar...

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Detalhes bibliográficos
Main Authors: Zhao, Mengyao, Lee, Wan-Ping, Garrison, Erik P., Marth, Gabor T.
Formato: Artigo
Idioma:Inglês
Publicado em: Public Library of Science 2013
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3852983/
https://ncbi.nlm.nih.gov/pubmed/24324759
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0082138
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