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Unrooted unordered homeomorphic subtree alignment of RNA trees

We generalize some current approaches for RNA tree alignment, which are traditionally confined to ordered rooted mappings, to also consider unordered unrooted mappings. We define the Homeomorphic Subtree Alignment problem (HSA), and present a new algorithm which applies to several modes, combining g...

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Bibliografiske detaljer
Main Authors: Milo, Nimrod, Zakov, Shay, Katzenelson, Erez, Bachmat, Eitan, Dinitz, Yefim, Ziv-Ukelson, Michal
Format: Artigo
Sprog:Inglês
Udgivet: BioMed Central 2013
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3765143/
https://ncbi.nlm.nih.gov/pubmed/23590940
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1748-7188-8-13
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