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Unrooted unordered homeomorphic subtree alignment of RNA trees

We generalize some current approaches for RNA tree alignment, which are traditionally confined to ordered rooted mappings, to also consider unordered unrooted mappings. We define the Homeomorphic Subtree Alignment problem (HSA), and present a new algorithm which applies to several modes, combining g...

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Detalhes bibliográficos
Main Authors: Milo, Nimrod, Zakov, Shay, Katzenelson, Erez, Bachmat, Eitan, Dinitz, Yefim, Ziv-Ukelson, Michal
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2013
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3765143/
https://ncbi.nlm.nih.gov/pubmed/23590940
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1748-7188-8-13
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