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Disk-based k-mer counting on a PC

BACKGROUND: The k-mer counting problem, which is to build the histogram of occurrences of every k-symbol long substring in a given text, is important for many bioinformatics applications. They include developing de Bruijn graph genome assemblers, fast multiple sequence alignment and repeat detection...

Ausführliche Beschreibung

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Bibliographische Detailangaben
Hauptverfasser: Deorowicz, Sebastian, Debudaj-Grabysz, Agnieszka, Grabowski, Szymon
Format: Artigo
Sprache:Inglês
Veröffentlicht: BioMed Central 2013
Schlagworte:
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3680041/
https://ncbi.nlm.nih.gov/pubmed/23679007
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-14-160
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