Lataa...

Indexing Arbitrary-Length k-Mers in Sequencing Reads

We propose a lightweight data structure for indexing and querying collections of NGS reads data in main memory. The data structure supports the interface proposed in the pioneering work by Philippe et al. for counting and locating k-mers in sequencing reads. Our solution, PgSA (pseudogenome suffix a...

Täydet tiedot

Tallennettuna:
Bibliografiset tiedot
Julkaisussa:PLoS One
Päätekijät: Kowalski, Tomasz, Grabowski, Szymon, Deorowicz, Sebastian
Aineistotyyppi: Artigo
Kieli:Inglês
Julkaistu: Public Library of Science 2015
Aiheet:
Linkit:https://ncbi.nlm.nih.gov/pmc/articles/PMC4504488/
https://ncbi.nlm.nih.gov/pubmed/26182400
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0133198
Tagit: Lisää tagi
Ei tageja, Lisää ensimmäinen tagi!