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Implementation of the Force Decomposition Machine for Molecular Dynamics Simulations

We present the design and implementation of the Force Decomposition Machine (FDM), a cluster of personal computers (PCs) that is tailored to running molecular dynamics (MD) simulations using the distributed diagonal force decomposition (DDFD) parallelization method. The cluster interconnect architec...

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Enregistré dans:
Détails bibliographiques
Auteurs principaux: Borštnik, Urban, Miller, Benjamin T., Brooks, Bernard R., Janežič, Dušanka
Format: Artigo
Langue:Inglês
Publié: 2012
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC3508327/
https://ncbi.nlm.nih.gov/pubmed/23085166
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.jmgm.2012.06.015
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