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The Amber ff99 Force Field Predicts Relative Free Energy Changes for RNA Helix Formation

The ability of the Amber ff99 force field to predict relative free energies of RNA helix formation was investigated. The test systems were three hexaloop RNA hairpins with identical loops and varying stems. The potential of mean force of stretching the hairpins from the native state to an extended c...

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Detalhes bibliográficos
Main Authors: Spasic, Aleksandar, Serafini, John, Mathews, David H.
Formato: Artigo
Idioma:Inglês
Publicado em: 2012
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3482406/
https://ncbi.nlm.nih.gov/pubmed/23112748
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ct300240k
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