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Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters

We present a set of four parameters that in combination can predict DNA-binding residues on protein structures to a high degree of accuracy. These are the number of evolutionary conserved residues (N(cons)) and their spatial clustering (ρ(e)), hydrogen bond donor capability (D(p)) and residue propen...

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Main Authors: Dey, Sucharita, Pal, Arumay, Guharoy, Mainak, Sonavane, Shrihari, Chakrabarti, Pinak
Formáid: Artigo
Teanga:Inglês
Foilsithe: Oxford University Press 2012
Ábhair:
Rochtain Ar Líne:https://ncbi.nlm.nih.gov/pmc/articles/PMC3424558/
https://ncbi.nlm.nih.gov/pubmed/22641851
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gks405
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