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Structure Refinement of Protein Low Resolution Models Using the GNEIMO Constrained Dynamics Method

The challenge in protein structure prediction using homology modeling is the lack of reliable methods to refine the low resolution homology models. Unconstrained all-atom molecular dynamics (MD) does not serve well for structure refinement due to its limited conformational search. We have developed...

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Main Authors: Park, In-Hee, Gangupomu, Vamshi, Wagner, Jeffrey, Jain, Abhinandan, Vaidehi, Nagara-jan
Format: Artigo
Jezik:Inglês
Izdano: 2012
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC3377353/
https://ncbi.nlm.nih.gov/pubmed/22260550
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/jp209657n
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